DNA Damage Atlas


GSM5631736-Abl-Lig4-G2-AsisI-DNAPKi-8h-ENDseq_rep1




Basic Information

Manual

Sample ID:   

SRR16477904


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

DNAPKi (NU7441)


Treatment Dose:   

10uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

8hrs


Cell Phase:   

G2


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002638



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/569914/
chr195352894153528944/550720/
chr57329285273292855/542682/
chr159939343499393437/518988/
chr137570811275708115/480536/
chr2156144262156144265/461887/
chr23223600532236008/446611/
chr3116808386116808389/429293/
chr38918799989188002/415588/
chr3146812666146812669/409300/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/632330/
chr57329285273292855/585470/
chr159939343499393437/567642/
chr195352894153528944/562549/
chr2156144262156144265/496959/
chr137570811275708115/470486/
chr23223600532236008/453224/
chr155088950250889505/452712/
chr3146812666146812669/417024/
chr38918799989188002/414530/
Download the Full Merged Peak List




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