DNA Damage Atlas


GSM5631738-Abl-Lig4-G2-AsisI-NT-4h-ENDseq_rep1




Basic Information

Manual

Sample ID:   

SRR16477906


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

4hrs


Cell Phase:   

G2


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001779



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/415155/
chr195352894153528944/400875/
chr3145989049145989052/356065/
chr2156144262156144265/347033/
chr155088950250889505/334959/
chr159939343499393437/318982/
chr23223600532236008/313827/
chr1143739618143739621/306608/
chr162051698720516990/296414/
chr12111039091111039094/296245/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/498610/
chr3145989049145989052/433678/
chr155088950250889505/424700/
chr195352894153528944/411436/
chr2156144262156144265/401246/
chr159939343499393437/390302/
chr1143739618143739621/384731/
chr57329285273292855/363811/
chr23223600532236008/348921/
chr12111039091111039094/312854/
Download the Full Merged Peak List




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