DNA Damage Atlas


GSM5631739-Abl-Lig4-G2-AsisI-NT-4h-ENDseq_rep2




Basic Information

Manual

Sample ID:   

SRR16477907


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

4hrs


Cell Phase:   

G2


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.010522



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/582064/
chr155088950250889505/514440/
chr3145989049145989052/511290/
chr1143739618143739621/462854/
chr159939343499393437/461622/
chr2156144262156144265/455459/
chr57329285273292855/435372/
chr195352894153528944/421997/
chr23223600532236008/384015/
chr12111039091111039094/329462/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/498610/
chr3145989049145989052/433678/
chr155088950250889505/424700/
chr195352894153528944/411436/
chr2156144262156144265/401246/
chr159939343499393437/390302/
chr1143739618143739621/384731/
chr57329285273292855/363811/
chr23223600532236008/348921/
chr12111039091111039094/312854/
Download the Full Merged Peak List




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