DNA Damage Atlas


GSM5631740-Abl-Lig4-G2-AsisI-NT-8h-ENDseq_rep1




Basic Information

Manual

Sample ID:   

SRR16477908


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

8hrs


Cell Phase:   

G2


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002645



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr195352894153528944/332354/
chr9121477512121477515/308969/
chr23223600532236008/303281/
chr2156144262156144265/299136/
chr159939343499393437/297535/
chr57329285273292855/283373/
chr3116808386116808389/272273/
chr38918799989188002/259331/
chr162051698720516990/221542/
chr3115888066115888069/214173/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/364552/
chr195352894153528944/347666/
chr159939343499393437/339443/
chr2156144262156144265/336224/
chr57329285273292855/329120/
chr23223600532236008/324991/
chr38918799989188002/260562/
chr3116808386116808389/260304/
chr155088950250889505/255187/
chr1143739618143739621/250212/
Download the Full Merged Peak List




Copyright © 2023 All Rights Reserved by Wu lab