DNA Damage Atlas


GSM5631742-Abl-Lig4-STI-AsisI-DNAPKi-4h-ENDseq_rep1




Basic Information

Manual

Sample ID:   

SRR16477910


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

DNAPKi (NU7441)


Treatment Dose:   

10uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

4hrs


Cell Phase:   

G0


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001271



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr159939343499393437/2428390/
chr57329285273292855/2206820/
chr2156144262156144265/2095230/
chr137570811275708115/2032290/
chr4139192791139192794/1817110/
chr195352894153528944/1814030/
chr3146812666146812669/1762740/
chr9121477512121477515/1496940/
chr1143739618143739621/1487520/
chr115335176253351765/1443130/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr159939343499393437/1653985/
chr57329285273292855/1.5608e+06/
chr137570811275708115/1.48717e+06/
chr2156144262156144265/1418967/
chr195352894153528944/1.25518e+06/
chr4139192791139192794/1.24137e+06/
chr1143739618143739621/1.16663e+06/
chr155088950250889505/1.14826e+06/
chr9121477512121477515/1138021/
chr3146812666146812669/1.1354e+06/
Download the Full Merged Peak List




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