DNA Damage Atlas


GSM5631745-Abl-Lig4-STI-AsisI-DNAPKi-8h-ENDseq_rep2




Basic Information

Manual

Sample ID:   

SRR16477913


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

DNAPKi (NU7441)


Treatment Dose:   

10uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

8hrs


Cell Phase:   

G0


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003299



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr137570811275708115/1642950/
chr57329285273292855/1385070/
chr3115888066115888069/1290100/
chr159939343499393437/1238450/
chr9121477512121477515/1044210/
chr3146812666146812669/1015790/
chr4139192791139192794/1002760/
chr2156144262156144265/970324/
chr195352894153528944/930473/
chr137327200373272006/920569/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr137570811275708115/1484720/
chr57329285273292855/1267635/
chr159939343499393437/1182505/
chr3115888066115888069/1.14107e+06/
chr3146812666146812669/1060410/
chr4139192791139192794/1007040/
chr2156144262156144265/958664/
chr195352894153528944/956266/
chr3116808386116808389/912092/
chr9121477512121477515/905046/
Download the Full Merged Peak List




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