DNA Damage Atlas

GSM5631747-Abl-Lig4-STI-AsisI-NT-4h-ENDseq_rep2

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR16477915


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

4hrs


Cell Phase:   

G0


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004131


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr155088950250889505/992766/
chr57329285273292855/917233/
chr1143739618143739621/913890/
chr137570811275708115/906224/
chr159939343499393437/835752/
chr2156144262156144265/825361/
chr9121477512121477515/725245/
chr195352894153528944/696017/
chr4139192791139192794/671287/
chr3115888066115888069/593914/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr137570811275708115/1493702/
chr57329285273292855/1.484e+06/
chr159939343499393437/1419751/
chr2156144262156144265/1.37596e+06/
chr195352894153528944/1.22935e+06/
chr1143739618143739621/1155485/
chr155088950250889505/1153053/
chr4139192791139192794/1.13123e+06/
chr3146812666146812669/1.0233e+06/
chr9121477512121477515/987032/
Download the Full Merged Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab