DNA Damage Atlas


GSM5631749-Abl-Lig4-STI-AsisI-NT-8h-ENDseq_rep2




Basic Information

Manual

Sample ID:   

SRR16477917


Source Project ID:   

GSE186085

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

8hrs


Cell Phase:   

G0


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002854



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr137570811275708115/669524/
chr57329285273292855/617281/
chr159939343499393437/496400/
chr3115888066115888069/489824/
chr2156144262156144265/430693/
chr9121477512121477515/414259/
chr155088950250889505/411968/
chr4139192791139192794/409988/
chr195352894153528944/399988/
chr137327200373272006/393464/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr137570811275708115/807437/
chr57329285273292855/694839/
chr3115888066115888069/644727/
chr159939343499393437/607682/
chr3146812666146812669/597465/
chr3116808386116808389/555466/
chr2156144262156144265/546738/
chr4139192791139192794/490541/
chr137327200373272006/464593/
chr23223600532236008/460410/
Download the Full Merged Peak List




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