DNA Damage Atlas


GSM5661646-Drosophila_Larva-2hr-CPD_rep2




Basic Information

Manual

Sample ID:   

SRR16634676


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Larva


Organism:   

Drosophila melanogaster


Strain:   

yw


Treatment:   

UVB


Treatment Dose:   

600J/m2


Harvested Time:   

repair time: 2hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-CPD


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2L59445495946198594561826.2853/
chr2L59463665949387594808525.6136/
chr2L11525590115293951152792224.4957/
chr2R51443635145868514491524.2638/
chrY97393297546297490923.3264/
chr3L39321593933621393287223.2085/
chr2L69252586927783692671822.9018/
chr3R95261169530802952943122.8927/
chr3R29792839297942592979336722.875/
chr3R24630187246322192463086422.8582/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2L59445495946198594561826.2853/
chr2L11525605115288941152792225.8225/
chr2L59463825949387594808525.75/
chr2L87217748723144872263324.6915/
chr2R51443735145868514491524.4261/
chr3R95262889530739952943123.5435/
chr3R13022191130242951302385523.4527/
chrY97393697546297490923.3875/
chr2R22116757221192532211867423.2923/
chr3R28603174286053722860395723.1086/
Download the Full Merged Peak List



Motif Analysis

Manual





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