DNA Damage Atlas

GSM5661657-Drosophila_Adult-4hr-6-4_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR16634687


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Adults


Organism:   

Drosophila melanogaster


Strain:   

w1118


Treatment:   

UVB


Treatment Dose:   

1200J/m2


Harvested Time:   

repair time: 4hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-6-4


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY97376097615797498240.3158/
chrY14174341418641141813139.9106/
chr3R21366937213718542136831626.86/
chr2R50200450404150285026.5956/
chrY95609695787095735626.4117/
chrY30191513019992301968824.5484/
chr2R13691871370720137015724.1645/
chr3R26468041264697952646863122.4555/
chr3R10001451100038251000287522.2652/
chr2R12453831246915124628722.1732/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY97382497615797498241.4218/
chrY14174371418641141813140.0101/
chr2R50206150375550285029.8199/
chr3R21366937213718542136831626.86/
chrY95609695787095735626.4117/
chr2R96025596132296043724.2889/
chr3R10001607100037731000287523.3893/
chr2R13291641330741133012323.0261/
chr3R26468041264697952646863122.4555/
chr2R12453831246915124628722.1732/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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