DNA Damage Atlas

GSM5661668-Drosophila_Adult-xpc_ko-2hr-CPD_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR16634698


Source Project ID:   

GSE184926

Cell Type:   

Drosophila Adults


Organism:   

Drosophila melanogaster


Strain:   

XPC Kockout


Treatment:   

UVB


Treatment Dose:   

1200J/m2


Genotype:   

XPC-/-


Harvested Time:   

repair time: 2hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-CPD


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2R15317473153189281531783756.4048/
chr2R15309798153114361531107052.1073/
chrY97390797567497491040.3411/
chr3R70884577089772708931339.2291/
chr2R99266499408999363134.8845/
chr3L20187164201883952018787834.6677/
chr2R12179762121803891217996032.9099/
chr3R28484269284854492848510531.3969/
chr3R29924526299254672992494429.4038/
chr3R10785097107860221078567328.8984/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2R15317473153189281531783756.4048/
chr2R15309829153114361531107052.8207/
chrY97390797567497491040.3411/
chr3R70884577089772708931339.2291/
chr2R99266499408999363134.8845/
chr3L20187164201883952018787834.6677/
chr2R12179762121803891217996032.9099/
chr2R10799181080965108075031.354/
chr2R35143463514992351452631.216/
chr3R29924526299254672992494429.4038/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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