DNA Damage Atlas

GSM5661670-Drosophila_s2_cells-1hr-CPD_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR16634700


Source Project ID:   

GSE184926

Cell Type:   

Drosophila s2 cell


Organism:   

Drosophila melanogaster


Strain:   

wild type


Treatment:   

UVC


Treatment Dose:   

20J/m2


Genotype:   

WT


Harvested Time:   

repair time: 1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-CPD


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX567562356780745676717112.846/
chrX59033705905272590467880.5211/
chr3R20849652088824208747866.5989/
chr3R97834579785262978452544.4778/
chr3L10327311043010602631.0402/
chr3L23099342231042922310053430.082/
chr3L69593166965156696253129.5989/
chr2R42607204262210426115629.5558/
chr3L32491213252163325073529.2867/
chr2L13203469132112141320694929.0436/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX567563456780745676717113.354/
chrX59033705905272590467880.5211/
chr3R20849762088824208747866.7892/
chr3R97834579785242978452544.9761/
chr3L10327311036710602631.3159/
chr3L23099416231042922310053430.5385/
chr2R42607564262210426115630.2875/
chr3L69593386965156696253129.7108/
chr3L32491213252155325073529.3639/
chr2L21573019215773772157459028.6287/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab