DNA Damage Atlas


GSM5661671-Drosophila_s2_cells-1hr-6-4_rep2




Basic Information

Manual

Sample ID:   

SRR16634701


Source Project ID:   

GSE184926

Cell Type:   

Drosophila s2 cell


Organism:   

Drosophila melanogaster


Strain:   

wild type


Treatment:   

UVC


Treatment Dose:   

20J/m2


Genotype:   

WT


Harvested Time:   

repair time: 1hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-6-4


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX590324359052715903843110.646/
chrX567565956779925676696103.383/
chr3R97835209785298978455752.1607/
chr3R20851592088827208849951.6576/
chrX10517469105252801052303925.9498/
chr2R42607684261982426105723.3145/
chrX10532114105356671053306922.8654/
chr412602231263435126202922.8296/
chr2L97006269704025970347022.1016/
chr3R22487331224914702248909621.8353/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX590331559052565903843115.564/
chrX567569256779925676696104.725/
chr3R97835209785298978455752.1607/
chr3R20851592088827208849951.6576/
chrX10532114105352771053306923.7506/
chr2R42607684261982426105723.3145/
chr412602891263435126202923.3086/
chr3R22487869224914702248909622.6512/
chr2L97006419704008970347022.2632/
chr2R18413871184196741841653821.7165/
Download the Full Merged Peak List



Motif Analysis

Manual





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