DNA Damage Atlas

GSM5661672-Drosophila_s2_cells-1_5hr-150um_cisplatin_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR16634702


Source Project ID:   

GSE184926

Cell Type:   

Drosophila s2 cell


Organism:   

Drosophila melanogaster


Strain:   

wild type


Treatment:   

Cisplatin


Treatment Dose:   

150uM


Genotype:   

WT


Harvested Time:   

repair time: 1.5hr


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Others:   

damage ip antibody: anti-Cisplatin


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX567575856781315677011132.121/
chr3R978347597852929784541127.308/
chr3R20851752089086208848967.0207/
chrX59024005905393590388259.9306/
chr2R63475256347923634772355.8587/
chr2L29503329753629664139.9909/
chr2R60127686016092601508739.6728/
chr3L82748483349283123339.4224/
chr3R26004442260075812600564136.725/
chr2L21675300216823522167846336.0621/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3R978378297852759784541152.248/
chrX567576056780295677011137.937/
chr3R20851752089086208848967.0207/
chrX59024595905393590388261.0988/
chr2R63475256347923634772355.8587/
chr2L21677929216823302167846345.4884/
chr2R18627771186295721862833442.0302/
chr410322141034697103380041.6669/
chr2R60127786015991601508740.7396/
chr2L29507829753629664140.5906/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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