DNA Damage Atlas

GSM5729919-DMSO06h_B3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17208977


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

6hrs


Treatment Dose:   

0.10%


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266450965664516616645131660474.9/
chr61605215501605218461605216973946.13/
chr157791066277910910779107853029.21/
chr116890004868900360689002031119.19/
chr139184054691840952918408191067.51/
chr7107410078107410887107410552613.245/
chr14313945563139480431394679528.004/
chr2330915923309198833091789496.78/
chr5126364068126364299126364182449.763/
chr5178707398178707677178707536398.826/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516616645131685375.1/
chr61605215511605218461605216973959.51/
chr157791066277910906779107853073.83/
chr116890005068900265689002031615.55/
chr139184064491840952918408191405.18/
chr7107410391107410887107410552997.754/
chr2330915953309198833091789500.572/
chr1285766412857685028576705482.4/
chr5178707442178707673178707536473.715/
chr7111165658111165863111165742470.82/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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