DNA Damage Atlas

GSM5729922-DMSO12h_B3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17208974


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

12hrs


Treatment Dose:   

0.10%


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664514616645131354630.1/
chr116890004768900258689001512210.73/
chr157791065877911037779108462135.55/
chr139184067891841078918408171403.42/
chr61605215521605218451605216971364.38/
chr81092604431092606601092605501246.03/
chr2152876122152876369152876244956.946/
chr14313945323139483531394682540.741/
chr11206824922068272620682608510.794/
chr8118446395118446613118446503462.037/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664514616645131354817.2/
chr157791066477910909779108463298.08/
chr116890004968900258689001512231.89/
chr139184073691841018918408171979.56/
chr61605215521605218431605216971372.22/
chr5178707473178707677178707532847.048/
chr3466218346623884662279703.158/
chr11206824942068270320682608561.184/
chr7127595431275977412759677544.559/
chr5126364067126364273126364241523.722/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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