DNA Damage Atlas

GSM5729925-DMSO24h_B3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17208971


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.10%


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664514466645130636907.3/
chr139184064391840953918407975181.23/
chr116889991768900327689001713151.96/
chr81092604271092606591092605422168.14/
chr21528760921528763691528762291759.88/
chr143139453531394805313946691720.34/
chr51787073981787076771787075361296.03/
chr139237562892375930923757781153.54/
chr158134194181342225813420821070.79/
chr1285765092857690928576706981.586/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664514466645130637040.6/
chr116890004868900279689001715586.92/
chr139184064391840953918407975181.23/
chr81092604301092606581092605422203.66/
chr51787074571787076761787075361622.23/
chr107725703177257244772570991613.95/
chr61532720015327407153272231449.67/
chr158134194181342157813420821383.94/
chr71111656591111658731111657731286.74/
chr71275954212759765127596351214.18/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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