DNA Damage Atlas

GSM5729931-DMSO48h_B3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17208965


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

48hrs


Treatment Dose:   

0.10%


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451170664516736645130419714.3/
chr157791066277911146779107881728.79/
chr11689000496890034968900198974.815/
chr6160521554160522040160521696570.589/
chr13108734796108735328108734903314.304/
chr2984484299844868598448556290.294/
chr7127595411275981612759677270.238/
chr1285766402857690128576769258.369/
chr5178707463178707677178707569257.235/
chr11206824942068270020682596257.204/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451170664516736645130419714.3/
chr157791066377910910779107883382.02/
chr11689000496890034968900198974.815/
chr6160521554160521841160521696961.429/
chr1285766402857684528576769305.451/
chr7127595431275981612759677272.217/
chr5178707463178707677178707569257.235/
chr11206824942068270020682596257.204/
chr12231842862318449223184388250.524/
chr22234662152346641923466313242.861/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab