DNA Damage Atlas

GSM5730015-K562untreatedB2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17208950


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266450815664518756645131711483.2/
chr14313945563139480531394679774.05/
chr2152876069152876450152876258743.694/
chr11688997936890033868900183654.283/
chr7111165604111165949111165775649.564/
chr6155656006155656242155656123506.749/
chr15629412716294161462941441501.143/
chr6160521278160522171160521749479.992/
chr5283171928319742831845476.521/
chr15813419148134223581342073468.553/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451164664516816645131718582.2
chr157791066277911005779108141507.12
chr6160521553160521892160521749914.729
chr11689000466890033868900183893.759
chr8109260356109260661109260535599.293
chr2152876123152876450152876258491.122
chr14313945563139480531394679377.169
chr13918406449184122891840799317.895
chr13923756249237593092375740292.384
chr15813419418134222581342073238.447
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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