DNA Damage Atlas

GSM5730016-K562untreatedB3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17208949


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451073664516956645127025294.2/
chr61605215511605218921605217201323.01/
chr81092603561092606611092605071073.58/
chr2152876123152876499152876310693.822/
chr5583583455835859858358470692.599/
chr14313945333139480531394668593.457/
chr8257785202577879225778655587.267/
chr11688998596890038268900214566.848/
chr6166973671669776016697562521.279/
chr6156194361561965915619546503.882/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451164664516816645127018582.2
chr157791066277911005779107741507.12
chr6160521553160521892160521720914.729
chr11689000466890033868900214893.759
chr8109260356109260661109260507599.293
chr2152876123152876450152876310491.122
chr14313945563139480531394668377.169
chr13918406449184122891840826317.895
chr13923756249237593092375786292.384
chr15813419418134222581342034238.447
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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