DNA Damage Atlas

GSM5736233-N-A-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260883


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645130618398.6/
chr6160521554160522048160521676499.104/
chr16622800562284056228298212.891/
chr2330916903309219433091833178.785/
chr7107410397107410943107410541128.761/
chr14972047909720520997204890115.798/
chr20328157353281596132815847109.534/
chr344817371448175734481747193.1368/
chr820537482205378062053764385.5721/
chr710574134910574190310574178282.218/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645130664511.3
chr61605215541605218011605216763983.23
chr23309169033092006330918333049.61
chr6_mann_hap41218662121888412187721347.31
chr15779106627791090377910784634.654
chr7107410397107410906107410541581.224
chr4825151798251540982515293287.294
chr20328157363281595432815847175.121
chr18607307186073094960730833103.859
chrUn_gl00021614492114572514546587.1405
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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