DNA Damage Atlas

GSM5736234-N-A-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260884


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451112664516866645127779213.3/
chr23309159833092007330917933065.3/
chr61605215541605220381605216742560.64/
chr6_mann_hap4121838912188871218773843.165/
chr7107410385107410906107410530819.719/
chr8299357529937782993675565.731/
chr15779106627791114877910782499.683/
chr4825151798251541882515297380.409/
chr4190792621907951819079389289.725/
chr16811198148112003181119921231.539/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645127764511.3
chr61605215541605218011605216743983.23
chr23309169033092006330917933049.61
chr6_mann_hap41218662121888412187731347.31
chr15779106627791090377910782634.654
chr7107410397107410906107410530581.224
chr4825151798251540982515297287.294
chr20328157363281595432815847175.121
chr18607307186073094960730826103.859
chrUn_gl00021614492114572514552587.1405
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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