DNA Damage Atlas

GSM5736235-N-A-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260885


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266450905664516866645129349599.2/
chr61605215541605218011605216764962.97/
chr23309159633092006330917913063.53/
chr6_mann_hap41218662121888612187731698.38/
chr15779106627791090577910782745.517/
chr7107410383107410918107410532641.116/
chr8299357529937782993675517.601/
chr4825151798251541282515294362.839/
chr14847869578478715884787056234.337/
chr8835704228357064683570533226.451/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645129364511.3
chr61605215541605218011605216763983.23
chr23309169033092006330917913049.61
chr6_mann_hap41218662121888412187731347.31
chr15779106627791090377910782634.654
chr7107410397107410906107410532581.224
chr4825151798251540982515294287.294
chr20328157363281595432815843175.121
chr18607307186073094960730832103.859
chrUn_gl00021614492114572514505887.1405
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab