DNA Damage Atlas

GSM5736236-P-A-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260886


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516936645129219103.3/
chr149720450097205209972051081208.29/
chr12921774339217785392177532762.416/
chr6160521554160522041160521675458.275/
chr6620457846204598762045884423.375/
chr2330916903309198233091835327.564/
chr7105741536105741900105741717205.647/
chrX177553511775555617755452182.574/
chr7834883688348856883488467173.276/
chr17173036751730409217303864139.618/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516746645129273019.9
chr61605215541605218051605216753676.35
chr23309169033091982330918351825.49
chr6_mann_hap4121866512188831218773818.038
chr15779106657791088677910774537.284
chr7107410390107410887107410528519.565
chr4825151808251539482515286196.54
chr20328157373281595932815847143.852
chr7105741687105741900105741717115.071
chr10767207947672099476720893105.398
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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