DNA Damage Atlas

GSM5736238-P-A-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260888


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451165664516886645130468203.5/
chr61605215541605218051605216784450.25/
chr23309159733091988330917912114.59/
chr7107410390107410914107410539620.741/
chr6_mann_hap4121839112188851218772595.354/
chr8299357229937782993674439.654/
chr15779104567791090977910784359.016/
chr4825151788251541082515293327.417/
chr4190792571907951119079383191.704/
chr16811198178112003081119922182.884/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516746645130473019.9
chr61605215541605218051605216783676.35
chr23309169033091982330917911825.49
chr6_mann_hap4121866512188831218772818.038
chr15779106657791088677910784537.284
chr7107410390107410887107410539519.565
chr4825151808251539482515293196.54
chr20328157373281595932815848143.852
chr7105741687105741900105741792115.071
chr10767207947672099476720893105.398
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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