DNA Damage Atlas

GSM5736242-3-B-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260892


Source Project ID:   

GSE190955

Cell Type:   

Brain


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229761572297150474335/
chr710442806810442829610442818111933.6/
chr2126805943126806147126806044935.201/
chr6562403305624055656240442758.12/
chr1123318680123319237123318803617.094/
chr1860042108600472686004611587.699/
chr14106331106106331751106331397519.864/
chr10328164053281686332816528372.946/
chr12736183577361884173618508358.342/
chrX405990740603964060036334.257/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229761572297150655458
chr710442806810442829610442818120245
chr18600449886004726860046111519.51
chr141063312631063317481063313971256.68
chr6562403325624055656240442965.004
chr1123318680123319227123318803884.607
chr2126805947126806147126806044822.89
chr10328164053281686332816528522.96
chrX405990740603964060036512.414
chr12736183577361884173618508471.534
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab