DNA Damage Atlas

GSM5736243-12-B-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260893


Source Project ID:   

GSE190955

Cell Type:   

Brain


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 12 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229760972297148443372/
chr71044280681044286151044281828402.31/
chr141063312641063317491063313981079.58/
chr18600449886004726860046111062.56/
chr2126805946126806147126806045632.781/
chrX405975640604014060033545.565/
chrY392145139216773921563510.524/
chr1123318163123319239123318803339.7/
chr10328164033281687032816522232.149/
chr12736181597361894673618485170.463/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229760972297148479525
chr710442806810442829810442818217076.5
chr1860044988600472586004611977.619
chr14106331264106331749106331398892.081
chr2126805946126806147126806045699.946
chr1123318681123319218123318803582.224
chrX405990540603934060033498.469
chr10328164033281664932816522422.151
chrY392145139216773921563412.247
chr6562403305624055656240442276.01
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab