DNA Damage Atlas

GSM5736246-19-B-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260896


Source Project ID:   

GSE190955

Cell Type:   

Brain


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229763172297142464540/
chr710442806810442829910442818213076.5/
chr1860044988600472486004610810.272/
chr14106331264106331751106331397655.446/
chrX405990440601664060034489.469/
chr2126805946126806147126806045459.705/
chr1123318679123319250123318804420.739/
chr6562403315624055856240443416.919/
chr10328164053281688632816531216.55/
chrM668555185190.675/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229761172297142777342
chr710442806810442829810442818227179.2
chr18600449886004724860046101899.44
chr141063312641063317491063313971415.66
chrX4059905406016640600341361.52
chr1123318679123319229123318804955.822
chr6562403315624055556240443910.657
chr10328164053281665032816531782.062
chrY392145139216773921564478.331
chr12736181667361883373618500408.813
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab