DNA Damage Atlas

GSM5736251-3-H-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260901


Source Project ID:   

GSE190955

Cell Type:   

Heart


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975597229713673510.3/
chr71044280681044282951044281802382.37/
chr2126805947126806212126806078950.923/
chrM1270135843416.763/
chr14106331265106331750106331396166.381/
chr1123318681123319151123318799125.003/
rDNA35407361183600895.5747/
chr213667714113667800513667752184.3849/
chr1429534376295347952953447582.7796/
chr1310719824110719865810719849279.7816/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975597229713670320.1
chr71044280681044282941044281802379.64
chr21268059471268061471268060781081.91
chrM1269045843440.35
chr14106331266106331518106331396278.351
chr1123318685123318922123318799200.469
chr2136677205136677622136677521117.377
rDNA35468361183600888.1125
chr186004501860047228600461081.5482
chr1429534376295347932953447576.08
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab