DNA Damage Atlas

GSM5736255-12-H-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260905


Source Project ID:   

GSE190955

Cell Type:   

Heart


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 12 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296971722976217229713644922/
chr71044280681044282951044281802426.02/
chr2126805946126806147126806045837.843/
chr6562403315624055656240442286.393/
chrM869315843264.141/
chr1860044988600472586004610248.088/
chr14106331264106331752106331397214.159/
chr10328164053281664732816525174.533/
chr8123869800123870023123869910169.978/
chr1123318680123319428123318804151.301/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975537229713647580.1
chr71044280681044282951044281801895.89
chr21268059471268061471268060451315.76
chrM1269315843407.978
chr14106331264106331751106331397145.352
chr1860045018600472286004610124.701
chr1123318681123319170123318804118.087
chr2136677205136677622136677521105.241
chr14295343762953479329534475102.52
chr13107198241107198659107198557101.988
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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