DNA Damage Atlas

GSM5736259-19-H-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260909


Source Project ID:   

GSE190955

Cell Type:   

Heart


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975627229713654603.4/
chr71044280681044282971044281812192.13/
chrM469095170491.079/
chr2126805946126806459126806045425.765/
chr14106331264106331749106331398133.528/
chr1860044988600472386004609123.354/
chr1123318680123319218123318802109.906/
rDNA35406362183602099.0744/
chr1429534376295347952953447588.3205/
chr656240332562405545624044270.6642/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975517229713646619.1
chr71044280681044282951044281811767.48
chr21268059461268061471268060451215.82
chrM1268535170498.229
chr1123318681123318924123318802182.388
chr14106331266106331748106331398117.046
chr186004499860047228600460998.1128
rDNA10496639994.5123
rDNA35407360913602086.1463
chr1429534376295347932953447584.4196
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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