DNA Damage Atlas

GSM5736262-22-H-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260912


Source Project ID:   

GSE190955

Cell Type:   

Heart


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 22 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975477229713695824.7/
chr71044280681044282981044281824582.13/
chr21268059461268061471268060452100.09/
chrM669006191703.838/
chr13107198233107198659107198557553.247/
chr2136677100136677845136677520392.845/
chr14106331266106331534106331399338.64/
chrX760344076036407603539313.072/
chr3555754155557561755575515278.626/
chr1123318681123318930123318804262.765/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229754772297136255281
chr710442806810442829810442818211606.2
chr21268059461268061471268060451561.78
chr141063312661063315341063313991085.96
chrM669006191625.945
chr1123318681123318928123318804620.373
chr2136677205136677622136677520542.716
chrX405990840601604060033468.172
chr1860044988600472286004609445.259
chr13107198241107198658107198557383.592
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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