DNA Damage Atlas

GSM5736265-3-L-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260915


Source Project ID:   

GSE190955

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229761572297138424534/
chr71044280681044283001044281837425.89/
chr1860044988600472686004611616.264/
chr2126805946126806147126806045520.611/
chr1123318499123319152123318847480.748/
chr10328164043281664932816525432.28/
chr14106331031106331751106331397383.268/
chrY392145139216773921563364.069/
chrX405990340603964060034314.106/
chr12736183567361882173618500240.464/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229761372297138463272
chr710442806810442829810442818317026.6
chr18600449886004725860046111006.13
chr14106331264106331749106331397871.303
chr12736183567361861073618500790.868
chr10328164043281664932816525751.715
chr1123318679123319152123318847740.274
chr6562403315624055456240412730.606
chrX405990640601654060034581.842
chr2126805947126806147126806045570.548
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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