DNA Damage Atlas

GSM5736267-12-L-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260917


Source Project ID:   

GSE190955

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 12 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229755872297141336466/
chr71044280681044282971044281815072.34/
chr2126805946126806147126806045427.356/
chr14106331265106331751106331394323.239/
chrM1068585843283.813/
chr1123318677123319149123318801250.849/
chr10328164033281665032816525214.613/
chr1860044998600472586004611191.753/
chr6562403325624055656240443181.374/
chrY392145239216773921563175.409/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229755872297141498888
chr710442806810442829710442818140774.1
chr18600449986004725860046112637.79
chr11233186791233189371233188012585.72
chr141063312651063317511063313942583.19
chr65624033256240556562404432356.62
chr127361835773618841736184821462.83
chr103281640532816644328165251367.49
chrX4059905406037940600351147.29
chr81238698021238700281238699141012.47
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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