DNA Damage Atlas

GSM5736271-19-L-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260921


Source Project ID:   

GSE190955

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229754772297136309156/
chr710442806810442829810442818229314.4/
chr141063312651063315291063313962272.25/
chr11233186801233189281233188031661.1/
chrX4059904406016340600321260.49/
chr18600449886004726860046111111.88/
chr21268059461268061471268060451008.26/
chr2136677205136677623136677520414.311/
chr12736181797361860773618479365.029/
chrY392145139216773921563352.169/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229754772297136292691
chr710442806810442829410442818221285.2
chr11233186801233189281233188031909.03
chr141063312651063315291063313961809.18
chr18600449986004725860046111256.05
chr127361837073618602736184791187.46
chrX405990840601584060032942.379
chr2126805947126806147126806045853.539
chr10328164053281663432816448806.991
chr6562403315624055556240443681.142
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab