DNA Damage Atlas

GSM5736272-22-L-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260922


Source Project ID:   

GSE190955

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 22 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229762172297136332837/
chr71044280681044282981044281828445.29/
chrX405990640601684060036848.106/
chr1123318680123319203123318804624.67/
chr14106331262106331752106331397594.09/
chr1860044988600472686004611574.17/
chr12736183677361861073618487389.868/
chr2126805947126806488126806046386.318/
chr10328164053281665132816527373.444/
chr6181620851816232418162203257.055/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229755972297136462812
chr710442806810442829810442818235293.2
chr141063312641063315351063313973306.27
chr11233186801233189291233188042036.13
chrX4059906406016840600361834.66
chr18600449886004725860046111819.85
chr12736183677361861073618487977.918
chrY392145139216773921563536.92
chr10328164053281663432816527535.198
chr6562403305624055856240441469.426
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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