DNA Damage Atlas

GSM5736275-3-M-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260925


Source Project ID:   

GSE190955

Cell Type:   

Bone marrow


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722976047229714134950.3/
chr71044280681044282941044281801541.03/
chr2126805946126806436126806045700.349/
chr14106331265106331534106331398208.669/
chr2136677205136677623136677486163.281/
chr1860045018600472386004611109.184/
chr1273618371736185977361848395.9619/
chrX40599064060163406003374.4588/
chr1032816406328166413281652270.5722/
chrX76034397603640760353869.816/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975647229714144578.2
chr71044280681044282941044281801736.1
chr21268059461268061471268060451707.67
chr14106331266106331528106331398191.624
chr1860045018600472386004611144.392
chr1123318682123319173123318800133.165
chr12736183717361859773618483121.63
chr10328164063281663532816522113.687
chr213667720513667762213667748682.6398
chrX40599074060158406003358.6718
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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