DNA Damage Atlas

GSM5736276-3-M-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260926


Source Project ID:   

GSE190955

Cell Type:   

Bone marrow


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975647229713755777.4/
chr71044280681044282951044281802045.35/
chr21268059461268061471268060451617.28/
chr1860044988600472486004610162.112/
chr14106331266106331750106331399123.868/
chr1123318681123319173123318801102.899/
chr1032816405328166503281652670.6917/
chr1273618358736188207361847959.1157/
chrX40599074060158406003158.3861/
rDNA31104339355.9499/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975647229713744578.2
chr71044280681044282941044281801736.1
chr21268059461268061471268060451707.67
chr14106331266106331528106331399191.624
chr1860045018600472386004610144.392
chr1123318682123319173123318801133.165
chr12736183717361859773618479121.63
chr10328164063281663532816526113.687
chr213667720513667762213667752182.6398
chrX40599074060158406003158.6718
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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