DNA Damage Atlas

GSM5736280-12-M-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260930


Source Project ID:   

GSE190955

Cell Type:   

Bone marrow


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 12 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296971722975627229713649286.8/
chr21268059461268061471268060451828.05/
chr71044280681044282941044281801686.96/
chr2136677205136677622136677521215.318/
chr1860044988600472286004609126.418/
chr1123318680123319188123318800112.846/
chr14106331266106331748106331385100.305/
chr1032816405328166463281652480.2443/
chr1273618357736186057361848066.8395/
chrX40599084060159406003257.7855/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975627229713648914.4
chr21268059461268061471268060451738.7
chr71044280681044282941044281801623.63
chr2136677205136677622136677521133.324
chr1123318681123319188123318800113.921
chr1860045008600472286004609110.07
chr14106331266106331748106331385104.523
chr1032816405328166373281652483.4102
chr1273618357736186057361848069.1386
chrX40599084060159406003254.066
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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