DNA Damage Atlas

GSM5736283-19-M-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260933


Source Project ID:   

GSE190955

Cell Type:   

Bone marrow


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975637229713633871.4/
chr21268059461268061471268060451261.58/
chr71044280681044282951044281801155.23/
chr1123318656123318930123318792125.165/
chr213667720513667762313667752196.1347/
chr1410633126610633175010633139083.7411/
chr186004499860047238600461060.3136/
chr1310719823810719865810719855743.7144/
chr1032816406328166343281651939.5036/
chrX76598459765993297659913537.8271/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975617229713632462.5
chr21268059461268061471268060451798.95
chr71044280681044282951044281801211.81
chr2136677205136677622136677521198.005
chr1123318681123318930123318792165.167
chr14106331266106331511106331390148.753
chr186004503860047228600461079.2399
chr1273618357736186037361849970.9844
chr1310719824110719865810719855770.7692
chr1032816406328166343281651969.409
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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