DNA Damage Atlas

GSM5736285-22-M-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260935


Source Project ID:   

GSE190955

Cell Type:   

Bone marrow


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 22 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229760972297141434221/
chr71044280681044282981044281829478.52/
chr14106331218106331748106331374551.796/
chrY392145139216783921563320.843/
chrX405990440603924060035318.491/
chr2126805946126806147126806045310.048/
chr1123318680123319215123318808237.181/
chr1860044998600472686004611183.575/
chr14624390876243931362439199122.925/
chr1032816405328168063281652699.238/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229759672297141367706
chr710442806810442829710442818215707.1
chr141063312641063315351063313741423.12
chrX405990440601624060035822.348
chr1123318680123318930123318808759.44
chr1860044998600472586004611459.011
chr12736183567361860873618443421.329
chr2126805947126806147126806045331.294
chr10328164053281663832816526276.441
chrY392145139216783921563254.115
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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