DNA Damage Atlas

GSM5736288-3-P-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260938


Source Project ID:   

GSE190955

Cell Type:   

PBMC


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296971722976217229714687398.9/
chr71044280681044282961044281812370.14/
chr2126805947126806147126806046749.23/
chr1123318681123319229123318804336.302/
chr14106331264106331751106331397171.529/
chr1860041988600472586004610136.449/
rDNA354063611935976120.783/
chr10815643308156453481564431120.312/
chr15896671318966733989667234120.069/
chr6562403325624078756240441106.938/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296971722975467229714693194.6
chr21268059471268061471268060464298.59
chr71044280681044282951044281812201.09
chr1123318681123318924123318804380.167
chr14106331264106331512106331397261.886
chr2136677205136677622136677521244.096
chr1860044988600472286004610234.156
chr13107198241107198658107198557171.805
chr14295343762953479329534475163.429
chr15573464295734685357346821146.207
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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