DNA Damage Atlas

GSM5736290-12-P-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260940


Source Project ID:   

GSE190955

Cell Type:   

PBMC


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 12 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722976107229713659118.3/
chr21268059461268061471268060455544.65/
chr71044280681044282951044281801853.3/
chr14295343762953479329534475270.917/
chr2136677205136677623136677521228.816/
chr13107198233107198658107198336182.647/
chr1123318681123318928123318803159.942/
chr1155092080155092280155092179159.409/
chr1860045018600472386004611146.733/
chr17454436544544415545443753138.34/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975607229713658483.8
chr21268059461268061471268060453771.09
chr71044280681044282951044281801526.26
chr14295343762953479329534475154.593
chr2136677205136677622136677521154.017
chr14106331265106331528106331398139.537
chr13107198240107198658107198336122.73
chr1123318681123318909123318803116.167
chr17454436544544407145443753101.812
chr1155092080155092280155092179101.421
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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