DNA Damage Atlas

GSM5736294-19-P-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260944


Source Project ID:   

GSE190955

Cell Type:   

PBMC


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975897229714787601.7/
chr21268059461268061471268060453282.65/
chr71044280681044282961044281812340.12/
chr1860044988600472286004609291.958/
chr14295343762953479329534475234.47/
chr2136677205136677623136677521148.71/
chr14106331265106331748106331384146.125/
chr17454436544544407245443753133.22/
chr1123318681123319153123318799124.838/
chr13107198233107198658107198336123.408/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975657229714786675.2
chr21268059461268061471268060453776.41
chr71044280681044282941044281811822.99
chr1123318681123318925123318799238.263
chr14295343762953479329534475175.703
chr1860044988600472286004609162.964
chr2136677205136677622136677521151.87
chr1155092080155092280155092179137.856
chr13107198241107198658107198336132.493
chr14106331265106331748106331384120.838
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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