DNA Damage Atlas

GSM5736297-22-P-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260947


Source Project ID:   

GSE190955

Cell Type:   

PBMC


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 22 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229760472297150568320/
chr710442806810442829810442818259243.7/
chr141063312641063317511063313994131.05/
chr18600449886004727860046113449.25/
chr11233186761233189261233188002871.47/
chrX4059903406039540600361771.53/
chr127361816273618626736184281133.81/
chrY392145139216773921563965.8/
chr10328164033281665632816528958.589/
chr6562403295624055856240442925.449/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229755772297150454324
chr710442806810442829810442818227056.2
chr141063312641063317481063313991763.25
chrX4059905406016240600361472.13
chr11233186801233189261233188001383.67
chr18600449886004725860046111316.3
chrY392145139216773921563461.164
chr12736181687361861173618428459.894
chr10328164033281663932816528434.166
chr6562403315624055656240442330.813
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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