DNA Damage Atlas

GSM5736300-3-S-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260950


Source Project ID:   

GSE190955

Cell Type:   

Sperm


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722976097229713644502.4/
chr21268059461268061481268060462828.01/
chr71044280681044283851044282251052.53/
chr2136677203136677623136677521450.989/
chr13107198233107198658107198557224.416/
chr14106331264106331531106331396169.208/
chr17454436534544407245443752148.559/
chr1123318680123318922123318800131.373/
chr1860044988600472386004609114.527/
chr14295341092953479329534492105.192/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975557229713654621
chr21268059461268061471268060463180.32
chr71044280681044282941044282251523.93
chr2136677205136677623136677521292.339
chr14106331264106331504106331396169.495
chr13107198241107198658107198557144.579
chr1123318680123318916123318800131.553
chr14295343762953479329534492131.161
chr1745443653454440714544375293.724
chr1557346429573468535734675181.2607
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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