DNA Damage Atlas

GSM5736301-3-S-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260951


Source Project ID:   

GSE190955

Cell Type:   

Sperm


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722976107229713667196.4/
chr21268059461268061471268060453171.39/
chr71044280681044282941044281801980.93/
chr14106331264106331517106331389218.46/
chr1123318680123318920123318799173.999/
chr2136677108136677623136677521160.981/
chr14295343762953479329534475120.761/
chr13107198234107198658107198336112.974/
rDNA4871837796.2418/
chr186004498860047228600460990.4722/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975557229713654621
chr21268059461268061471268060453180.32
chr71044280681044282941044281801523.93
chr2136677205136677623136677521292.339
chr14106331264106331504106331389169.495
chr13107198241107198658107198336144.579
chr1123318680123318916123318799131.553
chr14295343762953479329534475131.161
chr1745443653454440714544375293.724
chr1557346429573468535734675281.2607
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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