DNA Damage Atlas

GSM5736304-12-S-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17260954


Source Project ID:   

GSE190955

Cell Type:   

Sperm


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 12 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296971722975627229713639120.3/
chr21268059461268061471268060451510.27/
chr71044280681044283501044282081021.27/
chr14106331265106331533106331398150.664/
chr112331868112331892412331880196.0953/
rDNA35423361193599767.101/
chr930018033002548300234958.7697/
chr213667720513667766413667748257.2332/
chr1429534376295347932953447557.1646/
chr1557346423573468545734652647.4066/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975537229713654620.7
chr21268059461268061471268060452320.24
chr71044280681044282951044282081578.29
chr14106331265106331507106331398191.601
chr1123318681123318916123318801151.635
chr213667720513667762213667748289.4793
chr1429534376295347932953447585.5223
chr1310719824110719865810719833670.3687
chr186004510860047228600461362.8835
chr930018273002483300234962.7752
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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