DNA Damage Atlas

GSM5736307-19-S-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260957


Source Project ID:   

GSE190955

Cell Type:   

Sperm


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722975557229713634994.6/
chr21268059461268061471268060452490.1/
chr71044280681044282951044281801073.43/
chr2136677101136677623136677521186.331/
chr1410633126510633153210633139798.6614/
chr112331868112331892212331880084.0811/
chrX76034407603857760367277.7498/
chr1429534376295347932953447553.453/
chr1958113087581138225811362951.6927/
rDNA35407362543598450.2402/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296976722975457229713640777
chr21268059461268061471268060452483.22
chr71044280681044282941044281801221.77
chr2136677205136677622136677521173.966
chr14106331265106331509106331397143.22
chr112331868112331892112331880090.4196
chr1310719824110719865810719855776.0286
chr1958113245581138225811362958.1017
rDNA24895259502521955.6183
chr1429534376295347932953447555.451
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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