DNA Damage Atlas

GSM5736310-22-S-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17260960


Source Project ID:   

GSE190955

Cell Type:   

Sperm


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 22 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229756472297151366468/
chr710442806810442829810442818219553.6/
chr21268059461268061471268060451269.23/
chr141063312631063317501063313971035.98/
chr1860044988600472586004610902.604/
chr10328164033281665632816528624.867/
chr1123318680123319150123318804615.657/
chr6562403305624055956240443603.126/
chr2136677205136677979136677521532.384/
chr13107198233107198659107198557415.318/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969727229755472297151356222
chr710442806810442829510442818212409.7
chr21268059461268061471268060451161.93
chr2136677205136677622136677521833.844
chr14106331264106331749106331397695.399
chr1860044998600472586004610525.354
chr1123318680123319150123318804450.204
chr10328164053281665232816528419.623
chrX405990540601604060031405.499
chrX760344076036407603591396.048
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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